PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001251.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 370aa    MW: 40920.7 Da    PI: 9.5891
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001251.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.48.4e-17110208191
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              +fY +Y++   F+vr s++k+  r+ge+ +r +vCs++g +   ++          ++k+rr+r+++r++C ak+ ++++++ +++
  Itr_sc001251.1_g00015.1 110 EFYLSYGRAGDFDVRHSTMKRD-RDGEVNMRYLVCSRQGAKGGGSSGppiipgdggHVKQRRRRTSNRVECLAKVCLRRDNTREFM 194
                              6****************99998.9999**************9999889************************************** PP

                     FAR1  78 vtkleleHnHelap 91 
                              vt +e++H+H+l++
  Itr_sc001251.1_g00015.1 195 VTIFEEKHTHPLCS 208
                              ************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-13110207IPR004330FAR1 DNA binding domain
PfamPF105513.2E-8242291IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLLSAYHSIF QSNTTGVRQP QPLPISYGCP PMSRTSPSCH FIKFTTPEDG SQKTKCNTRG  60
GCVAVPSHDG ALGHGSDSAT ADPYYWTPIV EATVRPTIGL RFKTLSEGVE FYLSYGRAGD  120
FDVRHSTMKR DRDGEVNMRY LVCSRQGAKG GGSSGPPIIP GDGGHVKQRR RRTSNRVECL  180
AKVCLRRDNT REFMVTIFEE KHTHPLCSEA SKQFLRINRN LDVTQQAFIA SCIKANIGTA  240
QMYSLVFVPF TGVDHHRRCI TLGVGLLSKE DVDSYVWLLE RFKTAMGKVS EKAGGELAKD  300
EKMWARSTNL TTQSVVGKVC DRVLVYLNSR GAVMHSEIAG SGVSELAWCN NALRNSCKTT  360
RKTVIGYKYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-09FAR1 family protein